Tools & Software

Open-source bioinformatics tools for research and discovery

Featured

GRAVITy - GROMACS Automation Pipeline

A comprehensive automated pipeline for molecular dynamics simulations using GROMACS. Streamlines the entire MD workflow from system setup to trajectory analysis with an integrated GUI and 3D molecular visualization.

Python Flask Shell Perl GROMACS
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Stable

Boltz2-Notebook

A streamlined Colab-based pipeline for protein structure prediction and binding affinity analysis using the Boltz2 deep learning model with an interactive UI.

Python Jupyter JavaScript
Launch GitHub
Stable

Genome Inspector Web

An interactive web-based DNA sequence analysis tool for transcription, translation, reverse complement, GC content analysis, melting temperature calculation, and more.

HTML CSS JavaScript
Launch GitHub
Stable

Genome Inspector Desktop

A BioPython-based GUI desktop application for comprehensive DNA sequence analysis. Available for Windows and Linux with full feature set including ORF finding.

Python BioPython Tkinter
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In Dev

GRAVITy Pipeline

Automated GROMACS pipeline for MD simulations. Features system setup, protein rectification, parameterization, production runs, and trajectory analysis.

Python Flask Shell
View Project
Stable

UniDock GUI

A user-friendly graphical interface for Uni-Dock, a GPU-accelerated molecular docking program. Simplifies high-throughput virtual screening with up to 2000x speedup.

Python Uni-Dock GPU
Learn More GitHub
Stable

FELBuilder

Automated PCA + Free Energy Landscape analysis pipeline for MD trajectories. Single-command execution from raw simulations to publication-quality 2D/3D FEL plots.

Python GROMACS Matplotlib
Learn More GitHub

More Coming Soon

New bioinformatics tools and pipelines are constantly in development. Check back regularly or follow me on GitHub for updates!

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How to Cite

If you use any of these tools in your research, please cite appropriately

# Example citation format:

Tilewale, A. (2026). [Tool Name]. GitHub repository. https://github.com/AtharvaTilewale/[repo]

For specific citation information, please check individual tool documentation.

Contribute or Request Features

All tools are open-source and contributions are welcome! Found a bug or have a feature request? Open an issue on GitHub or reach out directly.

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